General Information
Overview
Data ID:
SAID209
GSE:
GSE247227
GSM:
GSM7885627
Species:
Mus musculus
Disease:
Tissue:
Characteristics
tissue: skin
cell line: YUMM3.3
cell type: mouse melanoma cell line
treatment: IFN-gamma
time: 4H
Experiment Information
Title:
Inhibition of anti-tumor immunity by melanoma cell-derived Activin-A depends on STING (RNA-Seq)
Summary:
The transforming growth factor-Î2 (TGF-êžμ) family member activin A (hereafter Activin-A) is overexpressed in many cancer types, often correlating with cancer-associated cachexia and poor prognosis. Activin-A secretion by melanoma cells indirectly impedes CD8+ T cell-mediated anti-tumor immunity and promotes resistance to immunotherapies, even though Activin-A can be proinflammatory in other contexts. To identify underlying mechanisms, we here analyzed the effect of Activin-A on syngeneic grafts of Braf mutant YUMM3.3 mouse melanoma cells and on their microenvironment using single-cell RNA sequencing. We found that the Activin-A-induced immune evasion was accompanied by a proinflammatory interferon signature across multiple cell types, and that the associated increase in tumor growth depended at least in part on pernicious STING activity within the melanoma cells. Besides corroborating a role for proinflammatory signals in facilitating immune evasion, our results suggest that STING holds considerable potential as a therapeutic target to mitigate tumor-promoting Activin-A signaling at least in melanoma.
Overall Design:
To assess how crosstalk of Activin-A with IFN-Î3 influences gene expression in the absence of the TME, mRNA from YUMM3.3 cells that were treated in quadriplicates with IFN-Î3 and Activin-A individually or together for 4 or 12 hrs was analyzed by Bulk RNA Barcoding and Sequencing (BRB-seq)
Cell Clustering
DEG Results



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